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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6473547_6474035_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6473547 - 6474035
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CACTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GGTATCTTAACT
Flanking Amino Acid:
KTNYNDRYDEIRRHWGGNVL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.1
0.72
0.8
76.3
31.8
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
73.7
0.82
1.3
82.36
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005247
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005479
6473442 - 6475121
1680