Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6489720_6490316_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6489720 - 6490316

Intron Length:

597

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAATA

5'SS Class:

strong_major

3'SS Sequence:

CTGTCATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCTGTCATT

Flanking Amino Acid:

TQNKNKSSDTGGKSELNSTS

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.1

1.04

0.7

89.9

22.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.4

0.68

0.9

77.3

35.9

Minor 5ss

37.1

-1.5

48.8

46.9

Minor BPS

53.6

0.19

2.4

82.98

39.3

Associated Gene:

Gene:

SURF6

Ensembl Gene ID:

ENSAPLG00000005069

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005226

6488889 - 6491516

2628