Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6492176_6492706_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6492176 - 6492706

Intron Length:

531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGAAC

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TAACTTTTGATT

Flanking Amino Acid:

DVYTQIFEDEVQLVRSLDEV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

75.4

34.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

73.9

0.54

1.1

75.2

38.8

Minor 5ss

31.9

-2.1

3.2

42.1

Minor BPS

58.1

0.34

1.2

69.17

35.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024237

6492107 - 6575678

83572

ENSAPLT00000005021

6492107 - 6515391

23285