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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6492892_6493816_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6492892 - 6493816
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAC
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ACTTACTTAGTA
Flanking Amino Acid:
EDFPERPPPCREATTFQKAW
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
68.1
36.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
38
-1.4
3.2
50.7
46.2
Minor BPS
56.7
0.21
1.7
66.71
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004861
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005021
6492107 - 6515391
23285
ENSAPLT00000024237
6492107 - 6575678
83572