Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6494771_6494917_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6494771 - 6494917

Intron Length:

147

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGGCAG

5'SS Class:

major

3'SS Sequence:

ATCCTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTTTCAGTGAGA

Flanking Amino Acid:

DATVEGFPIEGLEELWTTIQ

Intron Amino Acid Position:

191

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

63.3

42.8

Major BPS

0.65

1.5

85.7

34.9

Major PPT

82.7

0.73

0.8

Minor 5ss

31.8

-2.1

3.3

38.8

40.7

Minor BPS

47.4

-0.2

2.5

71.47

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024237

6492107 - 6575678

83572

ENSAPLT00000005021

6492107 - 6515391

23285