Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6496751_6497424_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6496751 - 6497424

Intron Length:

674

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTACGACAG

5'SS Class:

weak_major

3'SS Sequence:

CCTATTTCAATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

TGTTTCCTATTT

Flanking Amino Acid:

DKRLEILQHLVDLLPPACTQ

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.4

0.17

1.2

46.6

43.5

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

69.6

0.44

0.9

65.8

34.6

Minor 5ss

32.2

-2

3.3

39.5

45.8

Minor BPS

54.2

0.21

1.9

76.98

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024237

6492107 - 6575678

83572

ENSAPLT00000005021

6492107 - 6515391

23285