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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6501354_6501935_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6501354 - 6501935

Intron Length:

582

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTGTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTGAT

U12 Branch Point Sequence:

TCAGAGGTAACA

Flanking Amino Acid:

SDETDDIEQADVFKSSEVKI

Intron Amino Acid Position:

679

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

79.1

37.5

Major BPS

72.4

0.56

1.1

63.1

44.4

Major PPT

82.8

0.74

0.8

81.2

36.5

Minor 5ss

0.04

2.8

74.4

41.8

Minor BPS

39.2

-0.8

2.6

52.47

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024237

6492107 - 6575678

83572

ENSAPLT00000005021

6492107 - 6515391

23285