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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6520625_6520722_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6520625 - 6520722
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCATGTATAATT
Flanking Amino Acid:
TEEKPIQLFPQLFYQQPRVL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
49.1
0.01
2
69.09
42.5

Associated Gene:

Gene:
GBGT1
Ensembl Gene ID:
ENSAPLG00000004843
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004982
6518286 - 6524099
5814