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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6520759_6522846_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6520759 - 6522846
Intron Length:
2088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAATA
Flanking Amino Acid:
FYQQPRVLAPKRQDVLTVTP
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.5
0.98
0.6
92.3
18.1
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
75.6
0.8
1.5
83.27
30.4

Associated Gene:

Gene:
GBGT1
Ensembl Gene ID:
ENSAPLG00000004843
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004982
6518286 - 6524099
5814