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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6568919_6569102_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6568919 - 6569102
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGGACACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TGTCCTTGGACA
Flanking Amino Acid:
ELVQIISEERELKIPDNANV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.1
34.9
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
62.5
0.28
1
51.9
42.8
Minor 5ss
30.5
-2.2
2.8
37.5
39.9
Minor BPS
59.1
0.28
1.5
69.65
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019453
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034408
6568720 - 6569278
559