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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6573938_6574221_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6573938 - 6574221
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TACTCCTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TAATATTTCACC
Flanking Amino Acid:
FYQLCDLNVESLQKIIHRND
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.4
0.66
0.8
77.4
30.9
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
51.5
0.03
1.9
65.39
39.9

Associated Gene:

Gene:
GTF3C5
Ensembl Gene ID:
ENSAPLG00000003782
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003891
6571904 - 6579430
7527