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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6574950_6575515_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6574950 - 6575515
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
ATGTCCCTAATC
Flanking Amino Acid:
YSLPITVKKPVSHTVSVHDL
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
81.6
0.71
0.9
77.7
36.7
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
65.9
0.48
1.7
73.58
37.3

Associated Gene:

Gene:
GTF3C5
Ensembl Gene ID:
ENSAPLG00000003782
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003891
6571904 - 6579430
7527