Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6609528_6611223_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6609528 - 6611223

Intron Length:

1696

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

AGAGATTTACCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.8

0.98

0.7

83.1

30.9

Major BPS

72.5

0.56

1.2

39.9

Major PPT

76.2

0.59

0.9

69.3

41.7

Minor 5ss

30.4

-2.2

2.9

40.4

45.7

Minor BPS

46.4

-0.2

1.8

60.74

42.8

Associated Gene:

Gene:

GFI1B

Ensembl Gene ID:

ENSAPLG00000003373

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003457

6605206 - 6611270

6065