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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6630353_6631234_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6630353 - 6631234
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
AACAAACTGATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
TTGTTGCAAACA
Flanking Amino Acid:
TAAFKDNLICDRGPMLVNNL
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
49
-0
1
40
38.2
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
43.6
-0.4
2.5
62.99
43.7

Associated Gene:

Gene:
TSC1
Ensembl Gene ID:
ENSAPLG00000002487
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002539
6630247 - 6648491
18245