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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6637501_6637737_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6637501 - 6637737
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TGGTTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTTTGCTGATTT
Flanking Amino Acid:
SIQLSTEPQQVTIWSPSAVC
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
68.5
0.42
1
64.7
41.4
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
48.7
-0
2.1
72.32
45

Associated Gene:

Gene:
TSC1
Ensembl Gene ID:
ENSAPLG00000002487
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002539
6630247 - 6648491
18245