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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6640171_6641378_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6640171 - 6641378
Intron Length:
1208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCATCCCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ACTAAACTAATT
Flanking Amino Acid:
EDSAEKDREEDAISKEISEI
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
72.5
0.51
0.8
69.1
31.2
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
44
-0.3
2
62.42
41.2

Associated Gene:

Gene:
TSC1
Ensembl Gene ID:
ENSAPLG00000002487
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002539
6630247 - 6648491
18245