About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6641950_6642662_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6641950 - 6642662
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TTTAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTATTTAAACT
Flanking Amino Acid:
GADAHTKELNKLSLPSKSAD
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
69.5
35.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.3
0.84
0.8
84.9
35.2
Minor 5ss
33.3
-1.9
3.5
42.7
39.1
Minor BPS
59
0.36
1.7
76.69
40.1

Associated Gene:

Gene:
TSC1
Ensembl Gene ID:
ENSAPLG00000002487
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002539
6630247 - 6648491
18245