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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6644623_6644999_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6644623 - 6644999
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTGTTTGAACA
Flanking Amino Acid:
EFYNQSQELQTKLEDCRNMI
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.6
38.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
76
0.59
1
73.3
40.9
Minor 5ss
39.9
-1.1
2.8
52.3
44.5
Minor BPS
63.9
0.43
1.5
75.34
36.3

Associated Gene:

Gene:
TSC1
Ensembl Gene ID:
ENSAPLG00000002487
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002539
6630247 - 6648491
18245