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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6646950_6647041_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6646950 - 6647041
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
KYLEDVKIKARGQLQAVESR
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.1
0.74
0.8
81.6
29.3
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
TSC1
Ensembl Gene ID:
ENSAPLG00000002487
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002539
6630247 - 6648491
18245