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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6652157_6656070_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6652157 - 6656070
Intron Length:
3914

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCACATGCT
5'SS Class:
major
3'SS Sequence:
CTGGGTTTATGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTTACA
Flanking Amino Acid:
EWLYHTEKLPRYQAQHSTSV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
69.4
39.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
48.4
-0
1.7
58.3
46.2
Minor 5ss
23.8
-3
4.2
40.9
45.5
Minor BPS
57
0.21
1.9
73
38.1

Associated Gene:

Gene:
SPACA9
Ensembl Gene ID:
ENSAPLG00000002446
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002453
6652072 - 6657213
5142