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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6663597_6667630_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6663597 - 6667630
Intron Length:
4034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATATTCTCATTT
Flanking Amino Acid:
IDHLKQNNDDAPRICILGPP
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.8
0.69
0.8
75.3
32.8
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
52
0.14
1.8
71.15
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002249
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002296
6662658 - 6730065
67408