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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6667681_6668379_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6667681 - 6668379
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCATCCTGTATT
Flanking Amino Acid:
GPPASGKTTIAMRLCKHLDA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
56.4
0.28
1.8
73.5
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002249
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002296
6662658 - 6730065
67408