Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6668494_6673718_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6668494 - 6673718

Intron Length:

5225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTAAG

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTTCTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

TTGTGAATATGC

Flanking Amino Acid:

EAKEYKERKQQIPNALWANL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

75.7

35.3

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

82.8

0.74

0.7

81.5

30.5

Minor 5ss

35.7

-1.6

2.6

41.1

45.5

Minor BPS

-1

2.4

52.06

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002296

6662658 - 6730065

67408