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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6686368_6689243_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6686368 - 6689243
Intron Length:
2876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCCTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCTTCCTTCTTC
Flanking Amino Acid:
LIAQKYGVVNICCGLLLKEA
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
80.7
0.69
0.7
80.3
25.1
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
44.5
-0.4
3.6
69.6
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002249
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002296
6662658 - 6730065
67408