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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6702784_6727105_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6702784 - 6727105
Intron Length:
24322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATGCTCTTACTC
Flanking Amino Acid:
ELQKARIIPNRVFFFNLPYE
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.1
0.57
0.9
69
37.2
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
53.4
0.09
1.6
61.38
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002249
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002296
6662658 - 6730065
67408