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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_67045_67459_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67045 - 67459
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGGGCAAGAACT
Flanking Amino Acid:
NLLPKLNIVQIVCQHYRHFG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
83.4
0.75
0.8
77.6
31.2
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
44.6
-0.3
2
64.19
45.2

Associated Gene:

Gene:
CLIC3
Ensembl Gene ID:
ENSAPLG00000005006
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005171
66120 - 69956
3837