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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6745430_6746271_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6745430 - 6746271
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTGTTATCT
Flanking Amino Acid:
PAPAAACYLKVGPKKEVVEC
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.6
0.78
0.8
81.5
35.9
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
60.6
0.41
2.3
87.15
38.9

Associated Gene:

Gene:
GTF3C4
Ensembl Gene ID:
ENSAPLG00000000962
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000965
6741601 - 6746610
5010