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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6746871_6748407_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6746871 - 6748407
Intron Length:
1537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GTTAACATCAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGTTTGTTAACA
Flanking Amino Acid:
ALLLNLSSGRQSNALKRKLQ
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.1
43.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
55.3
0.12
1.1
53.1
40.3
Minor 5ss
26.2
-2.7
2.9
22.9
37.3
Minor BPS
66.5
0.51
2
79.59
36.6

Associated Gene:

Gene:
DDX31
Ensembl Gene ID:
ENSAPLG00000016396
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017116
6746826 - 6793293
46468