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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6748916_6749382_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6748916 - 6749382
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCCTGTTAATT
Flanking Amino Acid:
FSQLDLHPHLISTITTVLKI
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.2
0.54
0.8
66.7
34.9
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
56.5
0.28
2.1
76.4
40.9

Associated Gene:

Gene:
DDX31
Ensembl Gene ID:
ENSAPLG00000016396
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017116
6746826 - 6793293
46468