About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6749427_6749850_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6749427 - 6749850
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
ATTTCCTGACTT
Flanking Amino Acid:
TTVLKICSMTNVQKETIPVL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
74.4
0.55
1
68.9
41.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
64.9
0.55
1.7
83.33
37.8

Associated Gene:

Gene:
DDX31
Ensembl Gene ID:
ENSAPLG00000016396
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017116
6746826 - 6793293
46468