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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6767240_6772785_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6767240 - 6772785
Intron Length:
5546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTGTTGCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
AAATCATTGACT
Flanking Amino Acid:
YVSLLASHKINVSEIKMEKV
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
83.6
0.76
0.9
81.3
36.4
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
64.3
0.53
1.6
76.84
38.9

Associated Gene:

Gene:
DDX31
Ensembl Gene ID:
ENSAPLG00000016396
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017116
6746826 - 6793293
46468