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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6772868_6778885_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6772868 - 6778885
Intron Length:
6018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACCGCCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTCCTCTAATC
Flanking Amino Acid:
RFKLPRPRSKKSCGTDPQEV
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
65.7
0.35
0.9
58.3
32.4
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
64.3
0.43
1.6
76.53
33.3

Associated Gene:

Gene:
DDX31
Ensembl Gene ID:
ENSAPLG00000016396
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017116
6746826 - 6793293
46468