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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6877209_6878205_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6877209 - 6878205
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
TDESSSDSDTTTPKPKVSKK
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
84.1
30.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.6
0.64
1
79.3
37.7
Minor 5ss
45.2
-0.5
2.8
57.4
40.7
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
TTF1
Ensembl Gene ID:
ENSAPLG00000016383
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017099
6876304 - 6883855
7552