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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6879083_6880482_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6879083 - 6880482

Intron Length:

1400

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCATA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCCTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TGTCTCTTAAAA

Flanking Amino Acid:

KARHLFCEKLAEGIPRAWRL

Intron Amino Acid Position:

442

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

79.8

35.3

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

82.6

0.73

0.7

74.8

35.5

Minor 5ss

43.1

-0.8

2.9

54.5

43.9

Minor BPS

68.8

0.58

1.4

74.98

35.6

Associated Gene:

Gene:

TTF1

Ensembl Gene ID:

ENSAPLG00000016383

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017099

6876304 - 6883855

7552