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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6889621_6889802_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6889621 - 6889802

Intron Length:

182

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTATGTATC

5'SS Class:

major

3'SS Sequence:

TTTCTCCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

CTTACTGTAACT

Flanking Amino Acid:

YPYLLLHEKVSELCVEVLCR

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

37.8

Major BPS

78.6

0.71

78.6

Major PPT

86.8

0.83

0.6

85.6

21.5

Minor 5ss

48.6

-0.1

2.4

68.5

35.9

Minor BPS

59.2

0.37

2.1

80.13

42.2

Associated Gene:

Gene:

SETX

Ensembl Gene ID:

ENSAPLG00000016276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016993

6887886 - 6935713

47828