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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6889913_6890374_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6889913 - 6890374

Intron Length:

462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTAATTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTTGCTTTAATT

Flanking Amino Acid:

YLFLVHPNEVIRRWAILTAR

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.2

28.3

Major BPS

0.92

0.9

86.2

29.1

Major PPT

75.9

0.58

0.8

73.9

35.3

Minor 5ss

40.6

-1

2.8

49.4

41.4

Minor BPS

80.1

1.02

1.2

91.31

32.6

Associated Gene:

Gene:

SETX

Ensembl Gene ID:

ENSAPLG00000016276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016993

6887886 - 6935713

47828