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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6890595_6890880_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6890595 - 6890880
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATTTTCAGAAAT
Flanking Amino Acid:
DTTNYKNYWLGICMLLTVLE
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
53.8
0.2
1.8
77.74
37.7

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828