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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6891001_6892588_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6891001 - 6892588
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTAAT
5'SS Class:
major
3'SS Sequence:
TTGTATGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGCATTTCAATT
Flanking Amino Acid:
ILHTMEKEADDDSTDPFWPA
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
79.7
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80
0.67
1
77.1
41.6
Minor 5ss
43.1
-0.8
2.7
56.7
42
Minor BPS
50
0.08
1.5
64.85
40.3

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828