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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6892761_6916176_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6892761 - 6916176
Intron Length:
23416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
EIKNIRNSFKRTKPEPEPDY
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.2
87.9
29.3
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
82.2
0.72
0.7
81.6
30
Minor 5ss
41.5
-0.9
2.9
58.8
45.7
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828