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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6923785_6924316_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6923785 - 6924316
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCTGTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AATTCGTTATTT
Flanking Amino Acid:
RDLPVASESAAFYMNEYNED
Intron Amino Acid Position:
2048

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.8
36
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
83.9
0.76
0.8
81.3
30.8
Minor 5ss
45.8
-0.4
2.8
69.7
40.4
Minor BPS
52.8
0.17
2.3
75.44
41.6

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828