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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6924485_6925050_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6924485 - 6925050
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
AATTAATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTATTGTTAATT
Flanking Amino Acid:
VGLLCRVLRGNTRNEKTTQK
Intron Amino Acid Position:
2104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.5
38.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.7
0.49
1
63.1
42.2
Minor 5ss
30.2
-2.3
3.3
30.7
43.3
Minor BPS
65.1
0.55
2
84.08
37.1

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828