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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6926732_6927277_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6926732 - 6927277
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCCTGATAT
Flanking Amino Acid:
RAMHRCEKRENQMIDDEIGR
Intron Amino Acid Position:
2228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.7
0.56
0.9
69.2
36
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
59.3
0.37
1.8
80
41.1

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828