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Intron Name: Anas_platyrhynchos_platyrhynchos_18_6927350_6927941_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6927350 - 6927941

Intron Length:

592

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAATT

5'SS Class:

strong_major

3'SS Sequence:

GTTGCACTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TTGCACTTGAAG

Flanking Amino Acid:

RQQLASQLKEVRGHSQKVQT

Intron Amino Acid Position:

2252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

84.6

33.3

Major BPS

0.3

62.3

30.4

Major PPT

0.29

1.1

61.3

39.4

Minor 5ss

-1.4

3.4

57.1

47.2

Minor BPS

49.7

-0.1

1.8

58.5

42.8

Associated Gene:

Gene:

SETX

Ensembl Gene ID:

ENSAPLG00000016276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016993

6887886 - 6935713

47828