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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6928092_6928606_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6928092 - 6928606
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACGTGTACAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTACGTGTACA
Flanking Amino Acid:
DPFSCVIVDEAGQSCEVETL
Intron Amino Acid Position:
2302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
48.9
-0
1.1
46.6
39
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
46.7
-0.2
2.5
69.18
42.5

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828