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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_6929790_6930143_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6929790 - 6930143
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TTAGTATTAAGA
Flanking Amino Acid:
YVYGKALKTDRATEENRCSS
Intron Amino Acid Position:
2400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
49.4
-0
2
64.69
41.7

Associated Gene:

Gene:
SETX
Ensembl Gene ID:
ENSAPLG00000016276
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016993
6887886 - 6935713
47828