Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7017793_7020376_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7017793 - 7020376

Intron Length:

2584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGCAGC

5'SS Class:

major

3'SS Sequence:

TATTTTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAT

U12 Branch Point Sequence:

ACTTCAGAAAAT

Flanking Amino Acid:

ESLHSVSRDLGELERLSNLV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

63.1

43.4

Major BPS

74.1

0.6

38.9

Major PPT

90.9

0.92

0.7

89.2

27.2

Minor 5ss

33.8

-1.8

2.8

34.8

41.4

Minor BPS

42.3

-0.5

2.4

64.56

45.5

Associated Gene:

Gene:

MED27

Ensembl Gene ID:

ENSAPLG00000016059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016762

7017587 - 7110035

92449