Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7091677_7098646_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7091677 - 7098646

Intron Length:

6970

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTATTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAC

U12 Branch Point Sequence:

TAATATATAACT

Flanking Amino Acid:

NENVYTEDGKLDIWSKSNYQ

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

30.2

Major BPS

69.1

0.48

32.1

Major PPT

78.4

0.64

0.8

73.1

30.3

Minor 5ss

40.5

-1.1

3.2

57.3

47.4

Minor BPS

57.1

0.3

1.8

76.47

39.3

Associated Gene:

Gene:

MED27

Ensembl Gene ID:

ENSAPLG00000016059

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016762

7017587 - 7110035

92449