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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7174937_7175854_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7174937 - 7175854
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCAATTTAA
5'SS Class:
weak_major
3'SS Sequence:
TGTGTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TTCACCCTAATC
Flanking Amino Acid:
SSVELSGSLENSERSHLSSF
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.6
0.13
1.4
57.7
38.1
Major BPS
68.7
0.46
1
71.3
34
Major PPT
78.1
0.63
0.9
70
41.4
Minor 5ss
30.5
-2.2
3.8
36.6
41.7
Minor BPS
61.5
0.34
1.7
71.85
39.4

Associated Gene:

Gene:
RAPGEF1
Ensembl Gene ID:
ENSAPLG00000015465
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016200
7174849 - 7212735
37887