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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7180685_7183852_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7180685 - 7183852
Intron Length:
3168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCATACCGTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCTTCCATACCG
Flanking Amino Acid:
LVQTDPRIQQSSAISSCYSR
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.1
0.32
1
54.2
40.9
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
50.3
-0.1
2
59.77
47.8

Associated Gene:

Gene:
RAPGEF1
Ensembl Gene ID:
ENSAPLG00000015465
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016200
7174849 - 7212735
37887