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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_7188907_7189296_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7188907 - 7189296
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGATCTACAATC
Flanking Amino Acid:
KPSLPACKSDSPSELPLTDR
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.4
0.71
0.9
75.8
38.2
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
49
-0.1
1.8
61.43
37.7

Associated Gene:

Gene:
RAPGEF1
Ensembl Gene ID:
ENSAPLG00000015465
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016200
7174849 - 7212735
37887